Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs10993201 chr9:97225664 C/A 8.1E-5 119 40.67 44.3 17.03 KM Plot
THYM rs11022063 chr11:11851124 G/A 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs11028287 chr11:3608539 A/G 0.0003 118 40.67 51.53 16 KM Plot
THYM rs11028302 chr11:3610784 G/A 0.0003 118 40.67 51.53 16 KM Plot
THYM rs11028310 chr11:3611857 C/T 0.000276 119 39.75 51.53 16 KM Plot
THYM rs11028316 chr11:3612459 G/A 0.000276 119 39.75 51.53 16 KM Plot
THYM rs11028320 chr11:3613163 T/G 0.000279 119 40.67 50.47 16 KM Plot
THYM rs11028321 chr11:3613293 G/T 0.000276 119 39.75 51.53 16 KM Plot
THYM rs11028322 chr11:3613328 G/T 0.000305 118 39.75 50.47 16 KM Plot
THYM rs11028346 chr11:3615597 T/C 0.000286 117 38.13 53.22 16 KM Plot
THYM rs11028374 chr11:3618417 A/T 0.00027 119 39.75 51.53 16 KM Plot
THYM rs11028375 chr11:3618511 G/C 0.000304 118 39.75 50.47 16 KM Plot
THYM rs11028377 chr11:3618740 G/A 0.000304 118 39.75 50.47 16 KM Plot
THYM rs11055350 chr12:13464674 A/G 0.000153 118 44.38 36.92 25.48 KM Plot
THYM rs11060751 chr12:130643069 G/A 1.73E-8 116 42.73 32.58 12.63 KM Plot